PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do005045.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 240aa    MW: 27053.3 Da    PI: 6.3144
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do005045.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.51.8e-061160154
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                +++ ++erE+r Rd+ N+ f eL  +l ++     + + Ka iL  +++ +k+L
  Do005045.1 11 KKVHKSEREKRKRDKQNDLFGELGNMLEPD----RQNNGKACILSDTTRILKDL 60
                678899**********************97....57788888888888888776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.46E-12778IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-10781IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.04E-4865No hitNo description
PROSITE profilePS5088811.1151060IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-41160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
LNNKCEKKAP KKVHKSEREK RKRDKQNDLF GELGNMLEPD RQNNGKACIL SDTTRILKDL  60
LSQVESLRQE NGALKNESRY VALERNELVD ENNVIRNEIS GLQNELRMRM EGNPIWSHDV  120
PRSNLTAPHP ATTVFALQHS PHPPVIATMA PPLQQLAVLE QSYTAPRREL QLFPEAASTE  180
DTEPPQDQGI SNHVTRPQAR YPTTMTTLPV HVYPILPRME DEQCSSGTTG SGEEDGIVNH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463230.11e-150hypothetical protein SORBIDRAFT_02g040140
TrEMBLC5X3661e-150C5X366_SORBI; Putative uncharacterized protein Sb02g040140
STRINGSb02g040140.11e-150(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24813884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47640.36e-30bHLH family protein